Fitness data for HSERO_RS13180 in Herbaspirillum seropedicae SmR1

urea ABC transporter permease
SEED: Urea ABC transporter, permease protein UrtC
KEGG: branched-chain amino acid transport system permease protein

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.3)


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group condition fitness t score  
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.5 -2.3 compare
stress nitrite 20 mM -0.5 -2.0 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.4 -1.3 compare
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -0.4 -1.8 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB -0.4 -1.8 compare
agar plate interaction Taped volatile agar plate with Trichoderma atroviridae IMI -0.4 -1.5 compare
stress Lomefloxacin 0.012 mM -0.3 -1.2 compare
stress Thallium(I) acetate 0.001 mg/ml -0.3 -1.6 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.3 +1.3 compare
supernatant control:fungal media R2A with Vogels_fungal_media 0.8X +0.3 +2.2 compare
control NoPredeControl +0.3 +1.2 compare
carbon source Xylitol (C) +0.3 +1.7 compare
carbon source D-Lactate (C) +0.4 +1.3 compare
carbon source L-Malic (C) +0.4 +1.6 compare
vitamin With vitamins t1 +0.4 +1.8 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.4 +1.5 compare
carbon source succinate (C) +0.4 +1.6 compare
agar plate interaction control Taped volatile agar plate with no fungus +0.4 +1.9 compare
carbon source D-Gluconic Acid (C) +0.4 +2.6 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.6 +1.6 compare