Fitness data for HSERO_RS13130 in Herbaspirillum seropedicae SmR1

LysR family transcriptional regulator
SEED: Transcriptional regulator, LysR family

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.5)


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group condition fitness t score  
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -1.2 -3.4 compare
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -1.1 -3.2 compare
stress nitrate 200 mM -0.7 -1.8 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB -0.6 -2.3 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB -0.6 -1.6 compare
carbon source Carbon source 2-Deoxy-D-Ribose 5 mM -0.6 -1.7 compare
nitrogen fixation control L-Malic (C) with ammonium chloride; anaerobic; 8 days -0.5 -1.5 compare
nitrogen source nitrate (N); low aeration -0.5 -1.6 compare
nitrogen source L-Glutamic (N); high aeration -0.5 -1.5 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.5 -1.0 compare
carbon source L-Arabinose (C) -0.5 -0.8 compare
carbon source D-Mannose (C) +0.5 +1.1 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.5 +2.1 compare
control NoPredeControl +0.5 +1.0 compare
stress Dimethyl Sulfoxide 5 vol% +0.5 +1.8 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.5 +1.7 compare
carbon source D,L-Lactate (C) +0.6 +1.9 compare
carbon source D-Sorbitol (C) +0.6 +2.5 compare
carbon source D-Galactose (C) +0.8 +1.8 compare
carbon source D-Glucose (C) +1.0 +2.4 compare