Fitness data for HSERO_RS12805 in Herbaspirillum seropedicae SmR1

AMP-dependent synthetase
SEED: Phenylacetate-coenzyme A ligase (EC 6.2.1.30)
KEGG: phenylacetate-CoA ligase

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.3)


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group condition fitness t score  
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.5 -2.4 compare
stress nitrate 200 mM -0.4 -1.7 compare
carbon source D-Mannitol (C) -0.4 -2.2 compare
carbon source a-Ketoglutaric (C) -0.4 -1.8 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.4 -1.6 compare
carbon source D-Sorbitol (C) -0.3 -1.4 compare
control NoPredeControl -0.3 -1.7 compare
carbon source D-Lactate (C) -0.3 -1.6 compare
nitrogen source nitrate (N); low aeration -0.3 -1.5 compare
control NoPredeControl -0.3 -1.4 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.3 -1.4 compare
carbon source D-Glucose-6-Phosphate (C) -0.3 -1.8 compare
carbon source D-Gluconic Acid (C) -0.3 -1.2 compare
carbon source Glycerol (C) -0.3 -1.5 compare
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB +0.4 +1.8 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.5 +1.0 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.5 +0.9 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.5 +2.0 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.5 +1.3 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.5 +1.5 compare