Fitness data for HSERO_RS12135 in Herbaspirillum seropedicae SmR1

Myo-inosose-2 dehydratase (EC 4.2.1.44) (from data)
Original annotation: xylose isomerase
SEED: Inosose dehydratase (EC 4.2.1.44)
KEGG: inosose dehydratase

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.4)


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group condition fitness t score  
carbon source m-Inositol (C) -8.5 -5.9 compare
carbon source m-Inositol (C) -5.1 -9.4 compare
supernatant control Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB -0.7 -4.2 compare
supernatant control Vogels_fungal_media 0.5X; growth supplemented with 0.4X LB -0.7 -2.5 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB -0.6 -3.5 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.6 -1.9 compare
stress Lomefloxacin 0.012 mM -0.5 -1.5 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.5 -2.4 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.5 -1.6 compare
carbon source D-Glucose-6-Phosphate (C) -0.5 -1.9 compare
carbon source L-Fucose (C) -0.5 -1.7 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.5 -2.5 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.4 -2.3 compare
supernatant control Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB -0.4 -2.0 compare
carbon source D-Galactose (C) -0.4 -2.1 compare
carbon source succinate (C) -0.4 -1.7 compare
carbon source Xylitol (C) -0.4 -1.3 compare
stress Cobalt chloride 0.2 mM +0.5 +1.9 compare
stress sodium fluoride 100 mM +0.6 +2.2 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.9 +1.2 compare