Fitness data for HSERO_RS11500 in Herbaspirillum seropedicae SmR1

Ribokinase (EC 2.7.1.15) (from data)
Original annotation: ribokinase
SEED: Ribokinase (EC 2.7.1.15)
KEGG: ribokinase

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.4)


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group condition fitness t score  
carbon source D-Ribose (C) -6.0 -5.6 compare
carbon source D-Ribose (C) -5.2 -5.5 compare
carbon source L-mannose (C) -1.2 -4.8 compare
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -1.1 -4.3 compare
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -1.0 -3.0 compare
carbon source L-mannose (C) -1.0 -5.1 compare
carbon source L-Rhamnose (C) -0.6 -1.9 compare
stress Fusidic 0.025 mg/ml -0.6 -1.8 compare
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -0.6 -2.4 compare
carbon source D-Glucose (C) -0.5 -1.7 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.5 -2.4 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.5 -2.2 compare
carbon source Carbon source 2-Deoxy-D-Ribose 5 mM -0.5 -2.4 compare
carbon source L-Asparagine (C) -0.5 -2.8 compare
carbon source L-Fucose (C) -0.4 -2.0 compare
carbon source D-Galactose (C) -0.4 -1.3 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.4 -1.9 compare
nitrogen fixation control L-Malic (C) with ammonium chloride; anaerobic; 8 days +0.5 +3.3 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.7 +2.0 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.8 +2.6 compare