Fitness data for HSERO_RS11440 in Herbaspirillum seropedicae SmR1

ABC transporter permease
SEED: Glutamine ABC transporter, periplasmic glutamine-binding protein (TC 3.A.1.3.2)
KEGG: polar amino acid transport system substrate-binding protein

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.4)


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group condition fitness t score  
carbon source D-Lactate (C) -0.7 -1.9 compare
carbon source pyruvate (C) -0.6 -1.8 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.5 -2.1 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.5 -1.8 compare
carbon source D-Sorbitol (C) -0.5 -1.9 compare
supernatant control Vogels_fungal_media 0.5X; growth supplemented with 0.4X LB -0.5 -2.7 compare
supernatant control Vogels_fungal_media 0.5X; growth supplemented with 0.4X LB -0.5 -1.5 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X -0.4 -1.8 compare
supernatant control:fungal media R2A with Vogels_fungal_media 0.2X +0.4 +2.6 compare
carbon source D,L-Malic Acid (C) +0.4 +1.8 compare
carbon source D-Gluconic Acid (C) +0.4 +1.7 compare
carbon source D-Glucose-6-Phosphate (C) +0.5 +1.4 compare
micoeukaryotes Acanthamoeba sp., muxed culture-2 +0.5 +2.0 compare
stress Fusidic 0.025 mg/ml +0.5 +1.0 compare
stress Cisplatin 0.003 mg/ml +0.5 +1.2 compare
carbon source Glycerol (C) +0.5 +1.6 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.8 +1.8 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.8 +1.2 compare
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB +0.9 +1.6 compare
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB +1.0 +1.9 compare