Fitness data for HSERO_RS11185 in Herbaspirillum seropedicae SmR1

amino acid dehydrogenase
SEED: D-amino acid dehydrogenase small subunit (EC 1.4.99.1)
KEGG: D-amino-acid dehydrogenase

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.8)


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group condition fitness t score  
agar plate interaction control Parafilmed volatile agar plate with no fungus -1.6 -2.4 compare
supernatant control Vogels_fungal_media; pH 5.5 -1.2 -1.4 compare
carbon source D-Gluconic Acid (C) -1.2 -1.6 compare
supernatant control Vogels_fungal_media; pH 5.5 -1.1 -1.8 compare
carbon source L-Fucose (C) -1.0 -1.0 compare
carbon source D-Ribose (C) -0.9 -1.5 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.9 -2.1 compare
carbon source pyruvate (C) -0.9 -1.5 compare
carbon source D-Gluconic Acid (C) -0.9 -1.7 compare
carbon source pyruvate (C) -0.8 -1.8 compare
carbon source succinate (C) -0.8 -1.5 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.8 +1.8 compare
agar plate interaction control Taped volatile agar plate with no fungus +0.8 +1.7 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus +1.0 +2.5 compare
control NoPredeControl +1.0 +2.5 compare
agar plate interaction control Taped volatile agar plate with no fungus +1.1 +2.9 compare
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB +1.1 +2.7 compare
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB +1.2 +3.1 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +1.3 +1.6 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +3.3 +2.0 compare