Fitness data for HSERO_RS10860 in Herbaspirillum seropedicae SmR1

RNA pseudouridylate synthase
SEED: tRNA pseudouridine synthase A (EC 4.2.1.70)
KEGG: ribosomal large subunit pseudouridine synthase F

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.5)


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group condition fitness t score  
stress Lomefloxacin 0.012 mM -1.6 -1.9 compare
stress Sisomicin 0.125 mg/ml -1.1 -1.7 compare
carbon source D-Glucose (C) -1.0 -1.2 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.6 -1.3 compare
carbon source D-Mannose (C) -0.6 -1.2 compare
agar plate interaction control Taped volatile agar plate with no fungus -0.5 -1.3 compare
carbon source D,L-Lactate (C) -0.5 -1.1 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.5 -1.2 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X -0.5 -1.1 compare
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB +0.5 +1.8 compare
carbon source pyruvate (C) +0.5 +1.8 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.5 +1.2 compare
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB +0.5 +2.3 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.6 +2.2 compare
nitrogen fixation control D-Glucose (C) with ammonium chloride; anaerobic; 8 days +0.6 +2.7 compare
vitamin With vitamins t2 +0.6 +2.1 compare
nutrient casaminos +0.7 +3.9 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.7 +1.8 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.9 +2.4 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +1.2 +2.9 compare