Fitness data for HSERO_RS08970 in Herbaspirillum seropedicae SmR1

membrane protein
SEED: Putative PRS2 protein

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.6)


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group condition fitness t score  
carbon source L-Arabinose (C) -1.0 -2.5 compare
carbon source D-Galactose (C) -0.7 -1.5 compare
carbon source D-Gluconic Acid (C) -0.7 -1.7 compare
carbon source pyruvate (C) -0.7 -2.5 compare
carbon source D-Xylose (C) -0.6 -0.8 compare
carbon source D-Galacturonic Acid (C) -0.6 -1.3 compare
carbon source Xylitol (C) -0.6 -1.5 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.6 +1.5 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB +0.6 +1.3 compare
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB +0.6 +1.8 compare
supernatant control Vogels_fungal_media 0.5X; growth supplemented with 0.4X LB +0.6 +0.8 compare
plant Control soil assay; outgrowth in LB +0.7 +1.6 compare
carbon source Carbon source 2-Deoxy-D-Ribose 5 mM +0.7 +1.0 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.7 +1.5 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.7 +1.7 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB +0.7 +2.5 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.7 +2.7 compare
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB +1.0 +1.5 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus +1.0 +2.3 compare
supernatant control Vogels_fungal_media; pH 5.5 +1.2 +1.4 compare