Fitness data for HSERO_RS08590 in Herbaspirillum seropedicae SmR1

pseudouridine synthase
SEED: Ribosomal small subunit pseudouridine synthase A (EC 4.2.1.70)
KEGG: ribosomal small subunit pseudouridine synthase A

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.4)


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group condition fitness t score  
stress Fusidic 0.025 mg/ml -0.7 -2.8 compare
carbon source succinate (C) -0.6 -2.7 compare
carbon source D-Gluconic Acid (C) -0.6 -2.0 compare
carbon source m-Inositol (C) -0.5 -2.5 compare
carbon source Glycerol (C) -0.5 -2.0 compare
carbon source L-Fucose (C) -0.5 -1.6 compare
carbon source L-Arabinose (C) -0.5 -1.8 compare
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -0.5 -1.5 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB -0.4 -1.8 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.4 -1.9 compare
carbon source D-Glucose (C) -0.4 -1.6 compare
stress Cobalt chloride 0.2 mM -0.4 -1.2 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X -0.4 -1.9 compare
nitrogen source nitrate (N); low aeration +0.4 +2.5 compare
nitrogen source nitrate (N); low aeration +0.5 +2.4 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.5 +1.9 compare
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB +0.6 +1.6 compare
carbon source D,L-Lactate (C) +0.6 +3.2 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.7 +1.2 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +1.3 +1.9 compare