Fitness data for HSERO_RS08355 in Herbaspirillum seropedicae SmR1

dioxygenase
SEED: Alkylated DNA repair protein AlkB
KEGG: alkylated DNA repair protein

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.4)


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group condition fitness t score  
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB -0.6 -1.7 compare
supernatant control Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB -0.6 -1.7 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB -0.5 -1.9 compare
carbon source L-Arabinose (C) -0.5 -1.1 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X -0.5 -1.9 compare
supernatant control Vogels_fungal_media 0.1X -0.4 -2.3 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.4 -1.7 compare
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB +0.4 +1.5 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.4 +1.1 compare
carbon source D-Mannose (C) +0.4 +1.7 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.4 +1.4 compare
carbon source D-Glucose (C) +0.4 +1.9 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.5 +1.1 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.5 +1.6 compare
stress Dimethyl Sulfoxide 5 vol% +0.5 +1.8 compare
stress Nickel (II) chloride 0.6 mM +0.5 +1.8 compare
stress A22 0.04 mg/ml +0.5 +2.3 compare
carbon source L-Malic (C) +0.6 +2.0 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.6 +2.1 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.7 +1.8 compare