Fitness data for HSERO_RS07870 in Herbaspirillum seropedicae SmR1

ABC transporter permease
SEED: Dipeptide transport system permease protein DppB (TC 3.A.1.5.2)
KEGG: peptide/nickel transport system permease protein

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.4)


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group condition fitness t score  
carbon source D-Mannose (C) -0.5 -2.1 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.5 -1.2 compare
carbon source D-Sorbitol (C) -0.5 -1.1 compare
vitamin No vitamins t1 -0.4 -1.9 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.4 -2.2 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.4 -1.8 compare
control NoPredeControl -0.4 -1.2 compare
r2a control R2A control -0.4 -1.9 compare
stress nitrite 20 mM -0.4 -1.3 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.4 -1.8 compare
vitamin With vitamins t2 -0.4 -1.5 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.4 -1.8 compare
agar plate interaction control Taped volatile agar plate with no fungus +0.4 +1.2 compare
nitrogen fixation D-Glucose (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic; 8 days +0.4 +1.8 compare
carbon source D-Glucose (C) +0.4 +1.4 compare
nitrogen source nitrate (N); high aeration +0.4 +2.2 compare
plant Control soil assay; outgrowth in LB +0.4 +2.0 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB +0.4 +1.6 compare
plant Control soil assay; outgrowth in LB +0.5 +2.1 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X +0.5 +2.8 compare