Fitness data for HSERO_RS07190 in Herbaspirillum seropedicae SmR1

ligand-gated channel
SEED: Ferrichrome-iron receptor
KEGG: iron complex outermembrane recepter protein

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.2)


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group condition fitness t score  
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.4 -2.1 compare
stress Lomefloxacin 0.012 mM -0.3 -1.3 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB -0.3 -1.5 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.3 -1.6 compare
nitrogen fixation control D-Glucose (C) with ammonium chloride; anaerobic; 8 days -0.3 -1.7 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.3 -1.5 compare
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -0.3 -1.5 compare
supernatant control:fungal media R2A with Vogels_fungal_media 0.8X -0.2 -1.6 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.3 +0.8 compare
carbon source Xylitol (C) +0.3 +1.5 compare
r2a control R2A control +0.3 +2.0 compare
nitrogen fixation D-Glucose (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic; 8 days +0.3 +1.5 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.3 +1.2 compare
micoeukaryotes C.elegans, mixed culture-1 +0.3 +1.5 compare
micoeukaryotes Acanthamoeba sp., muxed culture-2 +0.3 +1.8 compare
stress Cobalt chloride 0.2 mM +0.3 +1.9 compare
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB +0.3 +1.5 compare
nitrogen fixation control L-Malic (C) with ammonium chloride; anaerobic; 3 days +0.4 +2.8 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.4 +0.8 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.6 +1.7 compare