Fitness data for HSERO_RS07010 in Herbaspirillum seropedicae SmR1

pseudouridine synthase
SEED: Ribosomal large subunit pseudouridine synthase E (EC 4.2.1.70)
KEGG: ribosomal large subunit pseudouridine synthase E

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.5)


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group condition fitness t score  
carbon source D-Glucose (C) -1.0 -2.1 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.8 -1.3 compare
carbon source D-Gluconic Acid (C) -0.7 -1.3 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB -0.7 -1.4 compare
stress Lomefloxacin 0.012 mM -0.7 -1.2 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.6 -1.1 compare
supernatant control Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB -0.6 -1.6 compare
carbon source D-Galactose (C) -0.6 -1.6 compare
plant Control soil assay; outgrowth in LB -0.6 -1.6 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.5 -2.0 compare
stress A22 0.04 mg/ml -0.5 -1.8 compare
supernatant control:fungal media R2A with Vogels_fungal_media 0.8X -0.5 -1.4 compare
micoeukaryotes Acanthamoeba sp., muxed culture-2 +0.6 +2.2 compare
carbon source succinate (C) +0.6 +1.2 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.6 +1.3 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.8 +1.8 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.8 +1.9 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.9 +1.4 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.9 +1.4 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +3.3 +2.1 compare