Fitness data for HSERO_RS06940 in Herbaspirillum seropedicae SmR1

23S rRNA methyltransferase
SEED: Heat shock protein FtsJ/RrmJ @ Ribosomal RNA large subunit methyltransferase E (EC 2.1.1.-)
KEGG: ribosomal RNA large subunit methyltransferase E

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.9)


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group condition fitness t score  
stress Fusidic 0.025 mg/ml -3.2 -2.5 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -2.6 -2.7 compare
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -2.1 -1.2 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -1.7 -1.1 compare
agar plate interaction control Taped volatile agar plate with no fungus -1.6 -1.5 compare
control NoPredeControl -1.5 -0.8 compare
nutrient Min media with glucose -1.4 -2.4 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB -1.3 -1.6 compare
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -1.2 -1.3 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -1.2 -1.4 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -1.2 -1.1 compare
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -1.2 -1.6 compare
control NoPredeControl -1.2 -1.3 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -1.1 -2.0 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -1.1 -1.2 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.9 +2.6 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.9 +1.9 compare
carbon source D-Gluconic Acid (C) +1.0 +1.8 compare
carbon source D-Lactate (C) +1.0 +2.2 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +1.3 +3.4 compare