Fitness data for HSERO_RS06870 in Herbaspirillum seropedicae SmR1

L-2-keto-3-deoxyarabonate dehydratase (EC 4.2.1.43) (from data)
Original annotation: cytochrome C biogenesis protein CcdA
SEED: L-2-keto-3-deoxyarabonate dehydratase (EC 4.2.1.43)
KEGG: dihydrodipicolinate synthase

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.5)


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group condition fitness t score  
carbon source L-Arabinose (C) -3.9 -7.1 compare
carbon source L-Arabinose (C) -3.4 -5.3 compare
carbon source L-Fucose (C) -0.8 -2.1 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.6 -2.3 compare
carbon source Xylitol (C) +0.5 +1.4 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.5 +0.8 compare
carbon source pyruvate (C) +0.5 +2.2 compare
supernatant control Vogels_fungal_media 0.5X; growth supplemented with 0.4X LB +0.5 +3.2 compare
carbon source Glycerol (C) +0.5 +1.4 compare
supernatant control Vogels_fungal_media; pH 5.5 +0.5 +1.4 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.6 +1.8 compare
supernatant control Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB +0.6 +2.4 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X +0.6 +3.3 compare
carbon source D-Ribose (C) +0.7 +2.0 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.7 +2.0 compare
carbon source D-Galactose (C) +0.9 +2.8 compare
agar plate interaction control Taped volatile agar plate with no fungus +1.0 +2.2 compare
carbon source L-Fucose (C) +1.0 +6.6 compare
carbon source L-Fucose (C) +1.2 +5.6 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +1.4 +2.2 compare