Fitness data for HSERO_RS06815 in Herbaspirillum seropedicae SmR1

multidrug transporter
SEED: RND efflux system, inner membrane transporter CmeB
KEGG: hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.2)


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group condition fitness t score  
carbon source D-Galactose (C) -0.4 -2.1 compare
carbon source D,L-Lactate (C) -0.4 -2.2 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB -0.4 -1.9 compare
carbon source succinate (C) -0.3 -1.9 compare
supernatant control Vogels_fungal_media 0.5X; growth supplemented with 0.4X LB -0.3 -1.8 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.3 -1.9 compare
supernatant control Vogels_fungal_media; pH 5.5 -0.3 -1.4 compare
carbon source L-Rhamnose (C) -0.3 -1.8 compare
carbon source succinate (C) -0.3 -1.6 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.3 -1.5 compare
carbon source D-Lactate (C) -0.3 -1.5 compare
carbon source Xylitol (C) -0.3 -1.5 compare
carbon source Carbon source Deoxyribonucleic from herring sperm 5 mg/mL -0.3 -1.7 compare
nitrogen source Ammonium chloride (N); high aeration -0.2 -1.6 compare
control NoPredeControl -0.2 -1.0 compare
carbon source D-Glucose (C) -0.2 -1.4 compare
stress Nickel (II) chloride 0.6 mM +0.2 +1.7 compare
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB +0.3 +1.4 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.3 +1.3 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.3 +1.0 compare