Fitness data for HSERO_RS06785 in Herbaspirillum seropedicae SmR1

metal-dependent hydrolase
SEED: Branched-chain amino acid transport ATP-binding protein LivF (TC 3.A.1.4.1)
KEGG: branched-chain amino acid transport system ATP-binding protein

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.4)


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group condition fitness t score  
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.9 -2.2 compare
plant Control soil assay; outgrowth in LB -0.9 -1.9 compare
stress sodium fluoride 100 mM -0.7 -1.6 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.5 -1.4 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB -0.5 -0.8 compare
vitamin With vitamins t1 -0.4 -1.3 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.4 -1.4 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.4 -1.7 compare
stress Cobalt chloride 0.2 mM -0.4 -1.1 compare
carbon source Carbon source D-Glucose 20 mM +0.4 +1.9 compare
micoeukaryotes Acanthamoeba sp., muxed culture-2 +0.4 +1.7 compare
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB +0.5 +0.8 compare
carbon source Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM +0.5 +2.0 compare
carbon source Carbon source 2-Deoxy-D-Ribose 5 mM +0.5 +2.4 compare
agar plate interaction control Taped volatile agar plate with no fungus +0.5 +1.4 compare
supernatant control Vogels_fungal_media 0.1X +0.5 +1.7 compare
supernatant control Vogels_fungal_media; pH 5.5 +0.6 +1.5 compare
carbon source Carbon source Phenylacetic 5 mM +0.6 +2.6 compare
carbon source Carbon source Phenylacetic 5 mM +0.6 +3.6 compare
carbon source Carbon source 2-Deoxy-D-Ribose 5 mM +0.7 +2.6 compare