Fitness data for HSERO_RS06725 in Herbaspirillum seropedicae SmR1

glutamyl-tRNA amidotransferase
SEED: Amidase (EC 3.5.1.4)
KEGG: choline dehydrogenase

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.4)


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group condition fitness t score  
plant Control soil assay; outgrowth in LB -0.9 -2.5 compare
supernatant control Vogels_fungal_media; pH 5.5 -0.6 -1.2 compare
plant Control soil assay; outgrowth in LB -0.5 -1.8 compare
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -0.5 -1.6 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.4 -1.5 compare
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -0.4 -1.5 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.4 -1.6 compare
carbon source L-Rhamnose (C) -0.4 -2.0 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB -0.4 -1.2 compare
control NoPredeControl -0.4 -1.1 compare
carbon source D-Galacturonic Acid (C) -0.4 -2.3 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.4 -1.9 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X +0.4 +2.1 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.4 +1.6 compare
supernatant control Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB +0.4 +1.7 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB +0.4 +1.5 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X +0.4 +2.3 compare
vitamin No vitamins t2 +0.4 +1.8 compare
agar plate interaction Taped volatile agar plate with Trichoderma atroviridae IMI +0.5 +2.1 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.7 +2.6 compare