Fitness data for HSERO_RS05830 in Herbaspirillum seropedicae SmR1

amino acid ABC transporter permease
SEED: ABC-type amino acid transport system, permease component
KEGG: polar amino acid transport system permease protein

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.4)


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group condition fitness t score  
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.7 -1.9 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.5 -2.1 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.5 -2.0 compare
stress Cobalt chloride 0.2 mM -0.5 -1.4 compare
stress Lomefloxacin 0.012 mM -0.5 -1.0 compare
carbon source Carbon source Phenylacetic 5 mM -0.5 -2.7 compare
carbon source Carbon source 2-Deoxy-D-Ribose 5 mM -0.4 -2.0 compare
supernatant control Vogels_fungal_media 0.5X; growth supplemented with 0.4X LB -0.4 -1.6 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB -0.4 -1.3 compare
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -0.4 -1.4 compare
carbon source D-Ribose (C) -0.4 -1.3 compare
carbon source L-Fucose (C) +0.4 +1.6 compare
carbon source a-Ketoglutaric (C) +0.4 +1.8 compare
micoeukaryotes Acanthamoeba sp., muxed culture-2 +0.4 +2.3 compare
carbon source D-Galacturonic Acid (C) +0.4 +1.6 compare
carbon source L-Glutamine (C) +0.4 +1.7 compare
agar plate interaction Taped volatile agar plate with Trichoderma atroviridae IMI +0.4 +2.7 compare
control NoPredeControl +0.4 +1.0 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.5 +1.4 compare
carbon source Xylitol (C) +0.5 +1.6 compare