Fitness data for HSERO_RS05700 in Herbaspirillum seropedicae SmR1

LysR family transcriptional regulator
SEED: Transcriptional regulator

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.5)


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group condition fitness t score  
plant Control soil assay; outgrowth in LB -1.0 -4.1 compare
carbon source Carbon source 2-Deoxy-D-Ribose 5 mM -0.7 -3.6 compare
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -0.6 -1.9 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB -0.6 -3.5 compare
stress Dimethyl Sulfoxide 5 vol% -0.5 -1.8 compare
control NoPredeControl -0.5 -0.9 compare
carbon source L-Fucose (C) -0.5 -2.8 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.5 +2.2 compare
micoeukaryotes Acanthamoeba sp., muxed culture-2 +0.5 +2.3 compare
carbon source L-Proline (C) +0.5 +2.5 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.5 +2.6 compare
agar plate interaction Taped volatile agar plate with Trichoderma atroviridae IMI +0.5 +2.9 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.6 +3.7 compare
supernatant control Vogels_fungal_media 0.5X; growth supplemented with 0.4X LB +0.6 +2.4 compare
carbon source succinate (C) +0.6 +3.5 compare
agar plate interaction control Taped volatile agar plate with no fungus +0.6 +2.4 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.6 +0.9 compare
micoeukaryotes C.elegans, mixed culture-1 +0.6 +3.9 compare
carbon source D,L-Lactate (C) +0.7 +3.2 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +1.0 +1.9 compare