Fitness data for HSERO_RS05260 in Herbaspirillum seropedicae SmR1

ABC transporter for L-fucose, substrate-binding component (from data)
Original annotation: LacI family transcriptional regulator
SEED: Possible fucose ABC transporter, substrate-binding component
KEGG: ribose transport system substrate-binding protein

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.3)


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group condition fitness t score  
carbon source L-Fucose (C) -1.9 -7.2 compare
carbon source L-Fucose (C) -1.7 -7.1 compare
carbon source Xylitol (C) -0.7 -3.1 compare
carbon source D-Ribose (C) -0.6 -2.8 compare
carbon source D-Ribose (C) -0.5 -2.4 compare
carbon source Xylitol (C) -0.5 -2.4 compare
carbon source D-Mannose (C) -0.5 -2.0 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.4 -1.5 compare
carbon source Carbon source 2-Deoxy-D-Ribose 5 mM +0.3 +1.7 compare
nitrogen source Ammonium chloride (N); high aeration +0.3 +1.9 compare
nitrogen source nitrate (N); high aeration +0.3 +2.5 compare
carbon source L-Fucose (C) +0.4 +2.1 compare
carbon source Carbon source 2-Deoxy-D-Ribose 5 mM +0.4 +1.6 compare
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB +0.4 +1.9 compare
carbon source D-Xylose (C) +0.4 +2.7 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X +0.4 +2.2 compare
nutrient Min media with glucose +0.4 +1.9 compare
vitamin No vitamins t2 +0.4 +2.4 compare
plant Control soil assay; outgrowth in LB +0.5 +2.1 compare
supernatant control Vogels_fungal_media 0.1X +0.5 +2.2 compare