Fitness data for HSERO_RS05250 in Herbaspirillum seropedicae SmR1

ABC transporter for L-fucose, ATPase component (from data)
Original annotation: D-ribose transporter ATP binding protein
SEED: Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1)
KEGG: ribose transport system ATP-binding protein

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.3)


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group condition fitness t score  
carbon source L-Fucose (C) -2.2 -6.1 compare
carbon source L-Fucose (C) -2.1 -7.2 compare
carbon source D-Ribose (C) -0.7 -2.7 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.6 -2.1 compare
plant Control soil assay; outgrowth in LB -0.6 -2.2 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.4 -2.1 compare
carbon source L-Arabinose (C) -0.4 -2.0 compare
control NoPredeControl -0.4 -0.9 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.4 -1.8 compare
carbon source L-mannose (C) -0.4 -2.0 compare
stress Sisomicin 0.125 mg/ml -0.4 -1.3 compare
carbon source D-Galactose (C) -0.3 -1.9 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.4 +1.3 compare
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB +0.4 +1.3 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X +0.4 +1.7 compare
carbon source D-Sorbitol (C) +0.4 +1.9 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.4 +1.5 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.4 +2.0 compare
stress Cobalt chloride 0.2 mM +0.4 +1.7 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.5 +1.0 compare