Fitness data for HSERO_RS05095 in Herbaspirillum seropedicae SmR1

LacI family transcription regulator
SEED: ABC transporter, periplasmic sugar-binding protein precursor
KEGG: simple sugar transport system substrate-binding protein

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.5)


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group condition fitness t score  
carbon source Carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM -1.8 -8.5 compare
carbon source Carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM -1.7 -9.8 compare
carbon source Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM -1.7 -7.1 compare
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -1.0 -4.3 compare
carbon source Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM -0.8 -3.1 compare
carbon source D-Ribose (C) -0.8 -1.7 compare
carbon source L-mannose (C) -0.7 -3.9 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.6 -1.9 compare
nitrogen fixation control D-Glucose (C) with ammonium chloride; anaerobic; 3 days -0.5 -1.8 compare
carbon source L-Rhamnose (C) -0.5 -1.8 compare
nitrogen source Ammonium chloride (N); high aeration -0.5 -3.1 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.6 +2.7 compare
carbon source Carbon source D-Glucose 20 mM +0.6 +3.3 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.7 +1.6 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +1.0 +0.9 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus +1.2 +1.2 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus +1.5 +1.6 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +1.5 +1.0 compare
carbon source Carbon source 2-Deoxy-D-Ribose 5 mM +10.9 +54.1 compare
carbon source Carbon source 2-Deoxy-D-Ribose 5 mM +11.0 +59.3 compare