Fitness data for HSERO_RS05085 in Herbaspirillum seropedicae SmR1

sugar ABC transporter permease
SEED: Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)
KEGG: simple sugar transport system permease protein

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.4)


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group condition fitness t score  
carbon source Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM -2.0 -10.8 compare
carbon source Carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM -1.9 -9.7 compare
carbon source Carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM -1.8 -7.5 compare
carbon source Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM -1.2 -5.9 compare
carbon source L-Arabinose (C) -0.5 -2.2 compare
plant Control soil assay; outgrowth in LB -0.5 -1.9 compare
nitrogen source nitrate (N); high aeration -0.4 -2.4 compare
carbon source L-mannose (C) -0.4 -2.6 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.4 -1.9 compare
carbon source D-Mannitol (C) -0.4 -2.1 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.4 -2.0 compare
control NoPredeControl +0.4 +1.5 compare
carbon source L-Fucose (C) +0.4 +1.6 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X +0.4 +1.9 compare
agar plate interaction control Taped volatile agar plate with no fungus +0.4 +1.9 compare
carbon source Carbon source D-Glucose 20 mM +0.5 +2.9 compare
supernatant control Vogels_fungal_media; pH 5.5 +0.6 +2.5 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.9 +1.5 compare
carbon source Carbon source 2-Deoxy-D-Ribose 5 mM +10.7 +74.9 compare
carbon source Carbon source 2-Deoxy-D-Ribose 5 mM +10.7 +67.0 compare