Fitness data for HSERO_RS04940 in Herbaspirillum seropedicae SmR1

TonB-denpendent receptor
SEED: Ferrichrome-iron receptor
KEGG: iron complex outermembrane recepter protein

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.4)


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group condition fitness t score  
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -0.7 -3.3 compare
plant Control soil assay; outgrowth in LB -0.5 -1.5 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X -0.5 -2.4 compare
carbon source D-Galactose (C) -0.5 -2.5 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X -0.5 -1.9 compare
supernatant control:fungal media R2A with Vogels_fungal_media 0.2X -0.4 -2.2 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.4 -2.0 compare
plant Control soil assay; outgrowth in LB -0.4 -2.0 compare
carbon source D,L-Lactate (C) +0.4 +1.9 compare
carbon source D-Galacturonic Acid (C) +0.4 +2.4 compare
carbon source Xylitol (C) +0.4 +1.6 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.4 +1.8 compare
carbon source Glycerol (C) +0.4 +1.9 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.4 +2.5 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.5 +1.6 compare
stress Lomefloxacin 0.012 mM +0.5 +1.4 compare
carbon source L-Arabinose (C) +0.5 +1.8 compare
carbon source L-Lactate (C) +0.5 +2.9 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.5 +1.5 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.5 +2.2 compare