Fitness data for HSERO_RS04860 in Herbaspirillum seropedicae SmR1

sugar ABC transporter permease
SEED: Glycerol-3-phosphate ABC transporter, permease protein UgpE (TC 3.A.1.1.3)
KEGG: multiple sugar transport system permease protein

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 1.5)


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group condition fitness t score  
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -4.9 -1.4 compare
carbon source Glycerol (C) -4.4 -1.5 compare
micoeukaryotes C.elegans, mixed culture-1 -4.0 -1.7 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X -3.1 -1.4 compare
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -2.9 -0.9 compare
stress Sisomicin 0.125 mg/ml -2.8 -0.9 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -2.8 -0.9 compare
carbon source L-Rhamnose (C) -2.4 -1.3 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -2.3 -1.2 compare
supernatant control:fungal media R2A with Vogels_fungal_media 0.2X -2.1 -1.9 compare
stress Lomefloxacin 0.012 mM -2.0 -0.8 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -1.8 -1.0 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -1.8 -1.0 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -1.8 -1.1 compare
carbon source D-Glucose-6-Phosphate (C) -1.7 -1.2 compare
carbon source D-Xylose (C) -1.6 -0.9 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -1.6 -0.9 compare
carbon source Glycerol (C) -1.5 -1.0 compare
stress Chloride stress +1.8 +2.9 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +3.0 +6.1 compare