Fitness data for HSERO_RS04745 in Herbaspirillum seropedicae SmR1

ligand-gated channel protein
SEED: Ferrichrome-iron receptor
KEGG: iron complex outermembrane recepter protein

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.3)


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group condition fitness t score  
carbon source D-Ribose (C) -0.4 -1.8 compare
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -0.3 -1.8 compare
carbon source L-mannose (C) -0.3 -2.3 compare
stress Chloride stress -0.3 -2.0 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.3 -1.3 compare
control NoPredeControl +0.3 +1.5 compare
carbon source L-Arabinose (C) +0.3 +1.3 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.3 +1.3 compare
carbon source D-Mannose (C) +0.3 +1.8 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.3 +1.4 compare
carbon source a-Ketoglutaric (C) +0.3 +1.6 compare
carbon source D-Xylose (C) +0.3 +1.6 compare
supernatant control Vogels_fungal_media 0.5X; growth supplemented with 0.4X LB +0.4 +2.1 compare
carbon source D-Gluconic Acid (C) +0.4 +1.8 compare
stress Nickel (II) chloride 0.6 mM +0.4 +2.6 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB +0.4 +1.9 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.4 +2.1 compare
carbon source Xylitol (C) +0.4 +2.4 compare
supernatant control Vogels_fungal_media; pH 5.5 +0.4 +1.8 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.5 +1.5 compare