Fitness data for HSERO_RS04250 in Herbaspirillum seropedicae SmR1

C4-dicarboxylate ABC transporter permease
SEED: TRAP-type C4-dicarboxylate transport system, large permease component
KEGG: C4-dicarboxylate transporter, DctM subunit

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.4)


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group condition fitness t score  
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -1.2 -4.2 compare
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -1.1 -3.8 compare
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -0.9 -2.9 compare
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -0.9 -3.4 compare
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -0.7 -3.3 compare
nitrogen source nitrate (N); low aeration -0.6 -2.8 compare
nitrogen fixation control L-Malic (C) with ammonium chloride; anaerobic; 8 days -0.5 -2.8 compare
nitrogen fixation control L-Malic (C) with ammonium chloride; anaerobic; 8 days -0.5 -1.6 compare
carbon source L-Arabinose (C) -0.5 -1.5 compare
vitamin No vitamins t2 -0.5 -1.9 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.4 -2.0 compare
carbon source D-Glucose (C) -0.4 -1.4 compare
vitamin With vitamins t1 -0.4 -2.0 compare
stress sodium fluoride 100 mM -0.4 -1.6 compare
supernatant control Vogels_fungal_media 0.1X +0.4 +1.8 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB +0.5 +2.5 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.6 +0.7 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.6 +1.1 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.6 +1.0 compare
nitrogen fixation L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 8 days +0.8 +5.6 compare