Fitness data for HSERO_RS04200 in Herbaspirillum seropedicae SmR1

diguanylate cyclase
SEED: diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s)

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.3)


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group condition fitness t score  
nitrogen fixation D-Glucose (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic; 8 days -0.5 -4.1 compare
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -0.4 -2.3 compare
nitrogen fixation control L-Malic (C) with ammonium chloride; anaerobic; 8 days -0.4 -3.1 compare
nitrogen fixation control L-Malic (C) with ammonium chloride; anaerobic; 8 days -0.4 -2.6 compare
plant Control soil assay; outgrowth in LB -0.3 -1.9 compare
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -0.3 -1.6 compare
micoeukaryotes Dictyostellum sp.mixed culture-2 +0.3 +1.7 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.3 +0.9 compare
stress Cisplatin 0.003 mg/ml +0.3 +1.5 compare
carbon source L-Glutamine (C) +0.3 +1.6 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X +0.3 +2.0 compare
carbon source D-Mannose (C) +0.3 +1.6 compare
carbon source L-Malic (C) +0.3 +2.0 compare
agar plate interaction control Taped volatile agar plate with no fungus +0.3 +1.5 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.3 +1.8 compare
carbon source D-Glucose (C) +0.3 +2.0 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.4 +1.5 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.4 +1.9 compare
stress sodium fluoride 100 mM +0.4 +2.4 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.5 +1.4 compare