Fitness data for HSERO_RS04005 in Herbaspirillum seropedicae SmR1

type III secretion protein
SEED: Type III secretion bridge between inner and outermembrane lipoprotein (YscJ,HrcJ,EscJ, PscJ)
KEGG: type III secretion protein SctJ

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.6)


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group condition fitness t score  
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -1.0 -1.9 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.7 -1.9 compare
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB +0.6 +2.2 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X +0.7 +1.3 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X +0.7 +2.2 compare
stress Lomefloxacin 0.012 mM +0.7 +2.5 compare
carbon source D-Glucose (C) +0.7 +1.5 compare
carbon source Carbon source 2-Deoxy-D-Ribose 5 mM +0.7 +1.8 compare
carbon source Carbon source Phenylacetic 5 mM +0.7 +2.6 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.7 +2.2 compare
supernatant control Vogels_fungal_media 0.1X +0.7 +2.2 compare
supernatant control Vogels_fungal_media 0.5X; growth supplemented with 0.4X LB +0.7 +2.3 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB +0.8 +2.4 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X +0.8 +3.2 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.9 +1.0 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.9 +1.9 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.9 +2.6 compare
supernatant control Vogels_fungal_media; pH 5.5 +1.0 +2.3 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus +1.1 +3.1 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +1.3 +1.6 compare