Fitness data for HSERO_RS03935 in Herbaspirillum seropedicae SmR1

type III secretion protein
SEED: Flagellar biosynthesis protein FlhA
KEGG: type III secretion protein SctV

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.3)


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group condition fitness t score  
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB -0.7 -2.7 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.6 -2.7 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.6 -2.6 compare
nitrogen fixation control D-Glucose (C) with ammonium chloride; anaerobic; 8 days -0.6 -3.2 compare
nitrogen fixation control D-Glucose (C) with ammonium chloride; anaerobic; 8 days -0.5 -2.6 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.4 -2.5 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.4 -1.8 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.4 -1.5 compare
nitrogen fixation control D-Glucose (C) with ammonium chloride; anaerobic; 3 days -0.4 -2.6 compare
stress nitrite 20 mM -0.4 -1.5 compare
control NoPredeControl -0.4 -1.2 compare
nitrogen fixation control L-Malic (C) with ammonium chloride; anaerobic; 3 days -0.4 -1.9 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.4 -1.3 compare
carbon source L-Rhamnose (C) -0.3 -1.2 compare
supernatant control:fungal media R2A with Vogels_fungal_media 0.8X +0.4 +2.2 compare
carbon source D-Galactose (C) +0.4 +1.5 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.4 +2.2 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.6 +1.4 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +1.0 +1.6 compare
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB +1.1 +2.3 compare