Fitness data for HSERO_RS02540 in Herbaspirillum seropedicae SmR1

ABC transporter substrate-binding protein
SEED: TRAP-type C4-dicarboxylate transport system, periplasmic component

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.3)


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group condition fitness t score  
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.5 -2.7 compare
control NoPredeControl -0.5 -1.2 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.4 -1.9 compare
carbon source D-Ribose (C) -0.4 -1.5 compare
carbon source D,L-Lactate (C) -0.3 -1.9 compare
carbon source D-Lactate (C) -0.3 -1.5 compare
plant Control soil assay; outgrowth in LB +0.3 +1.6 compare
supernatant control:fungal media R2A with Vogels_fungal_media 0.2X +0.3 +1.8 compare
r2a control R2A control +0.3 +1.5 compare
stress Thallium(I) acetate 0.001 mg/ml +0.4 +1.7 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB +0.4 +2.3 compare
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB +0.4 +1.4 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.5 +1.2 compare
carbon source D-Galactose (C) +0.5 +1.8 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.5 +2.1 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.6 +2.3 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.6 +1.1 compare
carbon source Carbon source 2-Deoxy-D-Ribose 5 mM +0.7 +2.3 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.8 +1.1 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.9 +1.8 compare