Fitness data for HSERO_RS02190 in Herbaspirillum seropedicae SmR1

sugar ABC transporter substrate-binding protein
SEED: Various polyols ABC transporter, periplasmic substrate-binding protein
KEGG: sorbitol/mannitol transport system substrate-binding protein

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.4)


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group condition fitness t score  
carbon source D-Sorbitol (C) -3.7 -12.6 compare
carbon source D-Mannitol (C) -3.5 -15.3 compare
carbon source D-Mannitol (C) -3.3 -12.1 compare
carbon source Xylitol (C) -0.5 -2.0 compare
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -0.4 -2.7 compare
stress Lomefloxacin 0.012 mM -0.4 -1.6 compare
micoeukaryotes Acanthamoeba sp., muxed culture-2 +0.4 +1.6 compare
carbon source m-Inositol (C) +0.4 +2.1 compare
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB +0.4 +1.4 compare
micoeukaryotes C.elegans, mixed culture-1 +0.4 +2.5 compare
carbon source L-Arabinose (C) +0.4 +1.7 compare
plant Control soil assay; outgrowth in LB +0.4 +2.0 compare
carbon source a-Ketoglutaric (C) +0.4 +2.4 compare
carbon source L-Rhamnose (C) +0.4 +2.4 compare
carbon source L-Rhamnose (C) +0.4 +2.3 compare
carbon source L-mannose (C) +0.5 +3.0 compare
carbon source L-mannose (C) +0.5 +2.8 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.5 +2.4 compare
carbon source D-Gluconic Acid (C) +0.6 +2.5 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.6 +1.4 compare