Fitness data for HSERO_RS01965 in Herbaspirillum seropedicae SmR1

UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase
SEED: UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (EC 6.3.2.-)
KEGG: UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 1.2)


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group condition fitness t score  
nitrogen fixation control D-Glucose (C) with ammonium chloride; anaerobic; 3 days -2.3 -8.2 compare
nitrogen fixation control D-Glucose (C) with ammonium chloride; anaerobic; 8 days -2.3 -6.8 compare
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -2.3 -5.4 compare
nitrogen fixation L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 8 days -2.3 -9.2 compare
nitrogen fixation L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 8 days -2.2 -6.7 compare
nitrogen fixation control L-Malic (C) with ammonium chloride; anaerobic; 8 days -2.1 -7.6 compare
nitrogen fixation control D-Glucose (C) with ammonium chloride; anaerobic; 8 days -1.9 -8.6 compare
nitrogen fixation control L-Malic (C) with ammonium chloride; anaerobic; 8 days -1.9 -5.8 compare
nitrogen fixation control D-Glucose (C) with ammonium chloride; anaerobic; 3 days -1.7 -8.6 compare
nitrogen fixation control L-Malic (C) with ammonium chloride; anaerobic; 3 days -1.7 -7.2 compare
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -1.6 -4.2 compare
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -1.5 -5.1 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -1.5 -4.4 compare
nitrogen fixation D-Glucose (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic; 8 days -1.4 -5.1 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -1.4 -4.8 compare
nitrogen fixation control L-Malic (C) with ammonium chloride; anaerobic; 3 days -1.3 -4.3 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -1.3 -5.1 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB -1.2 -2.7 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -1.2 -5.0 compare
carbon source D-Mannitol (C) -1.2 -5.9 compare