Fitness data for HSERO_RS01880 in Herbaspirillum seropedicae SmR1

N-acetyl-anhydromuranmyl-L-alanine amidase
SEED: N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) AmpD
KEGG: AmpD protein

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 1.3)


Add gene:

Or see all 244 experiments or choose conditions

group condition fitness t score  
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -3.7 -2.6 compare
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -3.5 -2.1 compare
nitrogen fixation L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 8 days -2.5 -4.4 compare
nitrogen fixation L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 8 days -1.9 -3.8 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -1.8 -1.8 compare
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X -1.7 -1.6 compare
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -1.6 -1.3 compare
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -1.6 -1.3 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -1.5 -1.8 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -1.4 -1.6 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -1.4 -2.0 compare
r2a control R2A control -1.3 -2.1 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -1.3 -2.6 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -1.3 -1.5 compare
carbon source D-Xylose (C) +1.3 +1.9 compare
carbon source L-Lactate (C) +1.3 +2.6 compare
carbon source D-Gluconic Acid (C) +1.4 +3.3 compare
carbon source Glycerol (C) +1.4 +4.2 compare
carbon source D-Mannose (C) +1.5 +3.4 compare
carbon source D-Glucose (C) +2.0 +2.3 compare