Fitness data for HSERO_RS01445 in Herbaspirillum seropedicae SmR1

biopolymer transporter TonB
SEED: Ferric siderophore transport system, periplasmic binding protein TonB
KEGG: periplasmic protein TonB

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.4)


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group condition fitness t score  
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.6 -1.5 compare
agar plate interaction Taped volatile agar plate with Trichoderma atroviridae IMI -0.5 -1.9 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.5 -1.6 compare
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -0.5 -1.8 compare
control NoPredeControl -0.5 -1.2 compare
stress Sisomicin 0.125 mg/ml -0.4 -0.9 compare
carbon source D-Galacturonic Acid (C) +0.4 +1.5 compare
micoeukaryotes C.elegans, mixed culture-2 +0.4 +1.8 compare
carbon source D-Xylose (C) +0.4 +1.6 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.4 +1.1 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.5 +2.3 compare
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB +0.5 +0.8 compare
stress A22 0.02 mg/ml +0.5 +1.2 compare
carbon source L-Fucose (C) +0.5 +2.1 compare
stress sodium fluoride 100 mM +0.7 +1.8 compare
r2a control R2A control +0.8 +2.4 compare
stress nitrate 200 mM +0.8 +2.0 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +1.0 +1.3 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus +1.3 +1.5 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +1.4 +2.4 compare