Fitness data for HSERO_RS00890 in Herbaspirillum seropedicae SmR1

L-proline ABC transporter, permease component 2 (from data)
Original annotation: ABC transporter ATP-binding protein
SEED: Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1)
KEGG: branched-chain amino acid transport system permease protein

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.7)


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group condition fitness t score  
carbon source L-Proline (C) -4.8 -3.1 compare
carbon source L-Proline (C) -4.3 -4.1 compare
nitrogen source L-Proline (N) -2.6 -4.5 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -1.2 -1.9 compare
r2a control R2A control -0.8 -1.9 compare
micoeukaryotes C.elegans, mixed culture-2 -0.7 -1.8 compare
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -0.7 -1.1 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.7 -1.5 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.7 -1.5 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.7 -1.5 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X -0.7 -1.5 compare
carbon source L-Rhamnose (C) +0.7 +2.4 compare
stress Sisomicin 0.125 mg/ml +0.7 +1.5 compare
carbon source Glycerol (C) +0.7 +2.5 compare
carbon source L-Rhamnose (C) +0.7 +2.3 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.8 +1.5 compare
stress Thallium(I) acetate 0.001 mg/ml +0.8 +2.5 compare
vitamin No vitamins t2 +0.8 +1.8 compare
stress Lomefloxacin 0.012 mM +0.9 +3.0 compare
carbon source D-Glucose (C) +1.1 +3.5 compare