Fitness data for HSERO_RS00875 in Herbaspirillum seropedicae SmR1

hypothetical protein
SEED: Not a Proline racemase, nor 4-hydroxyproline epimerase [missing catalytic residues]
KEGG: proline racemase

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.3)


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group condition fitness t score  
carbon source L-Proline (C) -3.1 -5.4 compare
carbon source L-Proline (C) -2.1 -3.5 compare
nitrogen source L-Proline (N) -1.9 -3.8 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.6 -2.7 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.5 -2.5 compare
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -0.5 -2.4 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.5 -1.7 compare
r2a control R2A control -0.4 -2.0 compare
supernatant control Vogels_fungal_media; pH 5.5 -0.4 -2.5 compare
carbon source D-Sorbitol (C) -0.4 -1.3 compare
carbon source D-Galactose (C) -0.4 -1.8 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.3 -1.3 compare
nitrogen fixation L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 8 days -0.3 -2.2 compare
agar plate interaction control Taped volatile agar plate with no fungus -0.3 -1.2 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.4 +1.6 compare
plant Control soil assay; outgrowth in LB +0.4 +1.8 compare
vitamin No vitamins t2 +0.4 +1.7 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.4 +1.2 compare
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB +0.4 +1.5 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.8 +1.9 compare