Fitness data for HSERO_RS00870 in Herbaspirillum seropedicae SmR1

L-proline ABC transporter, substrate-binding component (from data)
Original annotation: ABC transporter substrate-binding protein
SEED: Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.4)


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group condition fitness t score  
carbon source L-Proline (C) -6.2 -11.2 compare
carbon source L-Proline (C) -6.1 -10.2 compare
nitrogen source L-Proline (N) -4.4 -13.4 compare
carbon source D-Ribose (C) -0.9 -4.2 compare
carbon source D-Xylose (C) -0.6 -3.0 compare
nutrient casaminos -0.6 -4.1 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.6 -2.8 compare
carbon source D-Sorbitol (C) -0.6 -3.0 compare
carbon source D-Glucose (C) -0.4 -1.6 compare
carbon source D-Galactose (C) -0.4 -2.2 compare
carbon source pyruvate (C) -0.4 -1.8 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB -0.4 -2.4 compare
carbon source pyruvate (C) -0.4 -2.3 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X -0.4 -1.7 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.4 -1.7 compare
carbon source D-Galacturonic Acid (C) -0.4 -2.1 compare
carbon source L-Asparagine (C) +0.4 +1.8 compare
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB +0.6 +2.0 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.7 +1.3 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.9 +1.4 compare