Fitness data for HSERO_RS00410 in Herbaspirillum seropedicae SmR1

phosphoheptose isomerase
SEED: FIG00977644: hypothetical protein
KEGG: hypothetical protein

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 1.1)


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group condition fitness t score  
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -2.3 -2.3 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X -2.2 -2.4 compare
carbon source D-Galactose (C) -1.9 -1.9 compare
supernatant control:fungal media R2A with Vogels_fungal_media 0.8X -1.7 -3.0 compare
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -1.5 -1.6 compare
vitamin No vitamins t2 -1.4 -2.1 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -1.4 -2.1 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -1.4 -1.8 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -1.3 -1.5 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -1.3 -1.2 compare
plant Control soil assay; outgrowth in LB -1.3 -1.7 compare
agar plate interaction control Taped volatile agar plate with no fungus -1.2 -1.7 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -1.2 -1.7 compare
stress Fusidic 0.025 mg/ml -1.2 -1.7 compare
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -1.1 -1.4 compare
stress Nickel (II) chloride 0.6 mM +1.1 +2.3 compare
control NoPredeControl +1.1 +1.6 compare
carbon source D-Ribose (C) +1.2 +1.7 compare
carbon source Xylitol (C) +1.3 +2.5 compare
carbon source D-Mannose (C) +1.6 +2.3 compare