Fitness data for HSERO_RS00300 in Herbaspirillum seropedicae SmR1

ornithine cyclodeaminase
SEED: Ornithine cyclodeaminase (EC 4.3.1.12)
KEGG: ornithine cyclodeaminase

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.5)


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group condition fitness t score  
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -1.0 -1.6 compare
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -0.8 -1.7 compare
stress Sisomicin 0.125 mg/ml -0.8 -1.3 compare
agar plate interaction control Taped volatile agar plate with no fungus -0.6 -1.5 compare
stress A22 0.02 mg/ml -0.6 -1.5 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB -0.6 -1.4 compare
supernatant control Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB -0.6 -1.4 compare
carbon source D-Glucose-6-Phosphate (C) -0.6 -1.7 compare
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -0.6 -1.2 compare
supernatant control:fungal media R2A with Vogels_fungal_media 0.8X -0.6 -3.0 compare
stress nitrate 200 mM -0.5 -1.9 compare
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -0.5 -1.3 compare
carbon source L-Glutamine (C) -0.5 -1.9 compare
carbon source D-Glucose (C) +0.5 +1.7 compare
vitamin With vitamins t1 +0.5 +1.4 compare
carbon source a-Ketoglutaric (C) +0.5 +2.0 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.6 +1.2 compare
carbon source D-Sorbitol (C) +0.6 +1.4 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.8 +1.4 compare
micoeukaryotes C.elegans, mixed culture-1 +0.8 +3.3 compare