Fitness data for HSERO_RS00280 in Herbaspirillum seropedicae SmR1

ABC transporter permease
SEED: Taurine transport system permease protein TauC
KEGG: sulfonate/nitrate/taurine transport system permease protein

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.4)


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group condition fitness t score  
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -0.6 -2.6 compare
carbon source L-Rhamnose (C) -0.6 -4.0 compare
carbon source D,L-Malic Acid (C) -0.5 -2.4 compare
carbon source D-Glucose (C) -0.5 -2.9 compare
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -0.5 -2.0 compare
nitrogen source nitrate (N); high aeration -0.5 -2.6 compare
nitrogen source Ammonium chloride (N); high aeration -0.5 -2.6 compare
carbon source D-Galactose (C) -0.4 -2.4 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.4 +2.0 compare
r2a control R2A control +0.4 +2.4 compare
carbon source L-Fucose (C) +0.5 +2.2 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.5 +1.6 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.5 +1.5 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.6 +1.1 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB +0.6 +2.5 compare
stress Lomefloxacin 0.012 mM +0.6 +2.2 compare
control NoPredeControl +0.8 +2.4 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.8 +2.4 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.9 +1.1 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.9 +1.1 compare