Fitness data for HMPREF1058_RS08175 in Phocaeicola vulgatus CL09T03C04

sigma-70 family RNA polymerase sigma factor
SEED: RNA polymerase ECF-type sigma factor
KEGG: RNA polymerase sigma-70 factor, ECF subfamily

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.6)


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group condition fitness t score  
nitrogen source Ammonium chloride (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen -1.7 -2.9 compare
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse3; day1 -1.1 -1.3 compare
carbon source Dextran 5 mg/ml (C) -1.0 -1.5 compare
carbon source D-Mannose 20 mM (C) -0.9 -2.6 compare
carbon source Dextran 5 mg/ml (C) -0.7 -1.2 compare
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day7 +0.6 +1.6 compare
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day6 +0.7 +1.4 compare
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day2 +0.7 +1.4 compare
carbon source Amylose from potato 5 mg/ml (C) +0.7 +1.7 compare
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day4 +0.7 +1.8 compare
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day6 +0.7 +2.4 compare
nitrogen source Ammonium chloride (N); Varel_Bryant_medium_Glucose_DTT_noNitrogen +0.7 +2.0 compare
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse4; day2 +0.7 +1.9 compare
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day2 +0.7 +2.0 compare
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day2 +0.8 +2.5 compare
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day5 +0.8 +2.1 compare
carbon source Rhamnogalacturonan from soy bean pectic fibre 5 mg/ml (C) +0.8 +1.9 compare
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day1 +0.8 +2.0 compare
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day1 +0.9 +2.9 compare
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day3 +1.4 +3.5 compare