Fitness data for BPHYT_RS34250 in Burkholderia phytofirmans PsJN

ABC transporter for L-rhamnose/L-fucose/xylitol, substrate-binding component (from data)
Original annotation: ABC transporter substrate-binding protein
SEED: Ribose ABC transporter, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1)
KEGG: simple sugar transport system substrate-binding protein

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.8)


Add gene:

Or see all 321 experiments or choose conditions

group condition fitness t score  
carbon source L-Fucose (C) -6.0 -9.5 compare
carbon source L-Rhamnose (C) -2.9 -7.5 compare
carbon source Xylitol (C) -2.3 -7.3 compare
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) -1.3 -6.2 compare
carbon source D-Fructose (C) -0.8 -4.8 compare
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +0.8 +3.2 compare
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +0.8 +3.2 compare
carbon source 2-Deoxy-D-ribonic lithium salt (C) +0.9 +3.5 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.9 +1.6 compare
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.9 +4.6 compare
in planta Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +1.0 +5.6 compare
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +1.1 +3.3 compare
carbon source 2-Deoxy-D-Ribose (C) +1.1 +4.6 compare
carbon source 2-Deoxy-D-Ribose (C) +1.2 +6.0 compare
in planta Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +1.2 +7.8 compare
carbon source 2-Deoxy-D-Ribose (C) +1.2 +5.9 compare
carbon source 2-Deoxy-D-Ribose (C) +1.4 +6.5 compare
in planta Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 +1.5 +6.5 compare
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days +1.7 +4.5 compare
in planta Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 +4.9 +7.7 compare