Fitness data for BPHYT_RS34240 in Burkholderia phytofirmans PsJN

ABC transporter for L-rhamnose/L-fucose/xylitol, permease component (from data)
Original annotation: ATPase
SEED: Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)
KEGG: simple sugar transport system permease protein

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.9)


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group condition fitness t score  
carbon source L-Fucose (C) -4.2 -4.0 compare
carbon source Xylitol (C) -2.3 -4.9 compare
carbon source L-Rhamnose (C) -1.5 -1.2 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB -1.5 -1.1 compare
nitrogen source L-Serine (N) -1.3 -1.9 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -1.3 -2.4 compare
phage 36hr PHYTO8 MOI 0.1 -1.2 -2.2 compare
motility outer cut, LB soft agar motility assay -1.1 -2.2 compare
phage 36hr PHYTO2 MOI 1 -1.1 -1.5 compare
phage 36hr PHYTO8 MOI 10 -1.0 -1.7 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -1.0 -1.6 compare
in planta Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.9 +3.1 compare
motility inner cut, LB soft agar motility assay +1.0 +1.1 compare
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +1.1 +2.5 compare
carbon source 2-Deoxy-D-Ribose (C) +1.1 +2.4 compare
in planta Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +1.2 +4.3 compare
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +1.2 +1.2 compare
in planta Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 +1.2 +4.0 compare
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +1.3 +1.2 compare
carbon source 2-Deoxy-D-Ribose (C) +1.7 +3.9 compare