Fitness data for BPHYT_RS33620 in Burkholderia phytofirmans PsJN

transcriptional regulator
SEED: FIG000557: hypothetical protein co-occurring with RecR
KEGG: LysR family transcriptional regulator, glycine cleavage system transcriptional activator

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.5)


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group condition fitness t score  
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB -1.1 -3.9 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB -0.7 -1.3 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X -0.6 -2.3 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.6 -1.9 compare
pH LB, pH5 -0.6 -2.1 compare
motility inner cut, LB soft agar motility assay -0.6 -2.0 compare
in planta Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 -0.6 -0.8 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.6 -1.5 compare
stress Polymyxin B sulfate 0.0625 mg/ml -0.5 -2.1 compare
pH LB, pH4 -0.5 -1.3 compare
phage 24hr PHYTO1 MOI 10 -0.5 -1.4 compare
in planta Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 -0.5 -1.8 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.6 +1.2 compare
supernatant control:fungal media R2A with Vogels_fungal_media 0.8X +0.6 +2.7 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.7 +1.8 compare
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) +0.8 +2.2 compare
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) +0.8 +3.2 compare
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.8 +2.3 compare
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) +0.9 +4.0 compare
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +1.3 +1.3 compare