Fitness data for BPHYT_RS33535 in Burkholderia phytofirmans PsJN

RNA polymerase sigma factor RpoD
SEED: RNA polymerase sigma factor RpoD
KEGG: RNA polymerase primary sigma factor

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 2.3)


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group condition fitness t score  
in planta Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 -7.3 -26.7 compare
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days -6.2 -23.8 compare
in planta Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 -4.4 -20.0 compare
carbon source Sebacic (C) -4.0 -18.9 compare
in planta Plant=Zea_mays; PlantTreatment=None; sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=15_days -3.7 -23.1 compare
carbon source Sebacic (C) -3.5 -19.8 compare
carbon source Suberic (C) -3.0 -17.1 compare
carbon source Suberic (C) -2.9 -15.1 compare
carbon source Azelaic (C) -2.8 -17.3 compare
carbon source Dodecandioic (C) -2.8 -17.1 compare
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) -2.8 -17.9 compare
carbon source 2-Deoxy-D-Ribose (C) -2.7 -19.6 compare
motility outer cut, LB soft agar motility assay -2.6 -17.4 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -2.6 -14.3 compare
carbon source Gly-Glu (C) -2.6 -18.2 compare
carbon source 2-Deoxy-D-Ribose (C) -2.5 -17.9 compare
motility outer cut, LB soft agar motility assay -2.5 -15.3 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -2.4 -14.9 compare
carbon source D-Glucosamine Hydrochloride (C) -2.3 -17.0 compare
stress Bacitracin 0.25 mg/ml +3.2 +29.0 compare