Fitness data for BPHYT_RS28720 in Burkholderia phytofirmans PsJN

shikimate dehydrogenase
SEED: Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25)
KEGG: shikimate dehydrogenase

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.8)


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group condition fitness t score  
phage 36hr PHYTO8 MOI 0.1 -1.8 -2.3 compare
tn7 efficiency Outgrowth after Tn7 transformation -1.7 -2.9 compare
phage 24hr PHYTO6 MOI 0.1 -1.5 -2.3 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -1.2 -2.2 compare
supernatant control Vogels_fungal_media; pH 5.5 -1.2 -0.8 compare
nophagecontrol 36hr Phyto Lib only -1.1 -1.3 compare
phage 24hr PHYTO3 MOI 10 -1.1 -1.1 compare
carbon source D,L-Lactate (C) -1.1 -1.8 compare
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days -1.0 -1.3 compare
in planta Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 -0.9 -1.2 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB -0.9 -1.0 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.8 -1.6 compare
replicable vector efficiency Conjugation on LB_DAP agar plate with WM3064 carrying pBBR1-MCS5; outgrowth in LB_gent50 -0.8 -0.9 compare
nitrogen source L-Lysine (N) +0.8 +1.5 compare
nitrogen source L-Alanine (N) +0.8 +1.4 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days +0.9 +1.4 compare
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +0.9 +1.8 compare
carbon source Phenylacetic 5 mM (C) +1.0 +2.4 compare
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days +1.1 +1.8 compare
phage 24hr PHYTO10 MOI 10 +1.2 +3.5 compare