Fitness data for BPHYT_RS27190 in Burkholderia phytofirmans PsJN

sugar ABC transporter permease
SEED: Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)
KEGG: ribose transport system permease protein

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.7)


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group condition fitness t score  
phage 36hr PHYTO6 MOI 0.1 -1.5 -2.2 compare
phage 36hr PHYTO2 MOI 1 -1.1 -2.0 compare
phage P. phyto PHYTO2 MOI 1 -1.0 -0.9 compare
phage 24hr PHYTO6 MOI 10 -1.0 -1.6 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -1.0 -2.4 compare
carbon source Azelaic (C) -1.0 -1.8 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.8 -2.0 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.8 -1.5 compare
phage P. phyto PHYTO2 MOI 1 -0.8 -1.0 compare
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days -0.8 -1.4 compare
phage 36hr PHYTO2 MOI 1 -0.8 -1.3 compare
in planta Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 -0.8 -2.6 compare
replicable vector efficiency Conjugation on LB_DAP agar plate with WM3064 carrying pBBR1-MCS5; outgrowth in LB_gent50 -0.7 -2.0 compare
motility inner cut, LB soft agar motility assay -0.7 -2.2 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.7 -1.9 compare
phage 24hr PHYTO7 MOI 1 +0.7 +1.5 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.8 +0.9 compare
supernatant control Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB +0.9 +1.9 compare
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days +1.0 +1.9 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +1.0 +1.3 compare